rs6388913 SNP Detail

Summary

• ID
  rs6388913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCAAGCT GATTAACTTA
  GAAGTTCTCT CAGATGTAAA ATGAGCCTAA TGCCACTTAT CATCTGAACA AGGTCACTGT
  GAAGAATGGC ATGCATGTCT AGAATATAAA GTAACCAGCA CAATTCCTGA CCTACAAAGG
  GCTCAATATA TTGAGTAAGT ATGTCCAACA GGAAGAGTGA ATCTAATAAG CTCTCTATTG
  Y
  CCTCTTCTGT CTTTGGTGGA TTATTCCCAT CCTGGGCATT ATTGGCCTGC CAAGCCCACA
  TCTACAAGCC AAAGAAAGTA AAGATTACCA GCAAACCAAC AGGGCAAAGG CACAACGTCT
  CTAATCAATT GCAGAAGGTT AACAATCCTG AGCCACAGTA ATGTCAGATC TGTAGCTTCC
  ACCCATTGCT ATAGCTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8795079	WI_WGS_2_164572616	WI	MOUSE	f	SNP							C		T
ss37520863	NES08878606	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C		T		C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6388913					SNP	T	C	C	C	C	C	C	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520863	NES08878606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482553 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569443	regulatory region 569443			within coordinates
Rr569444	regulatory region 569444			within coordinates
Rr569445	regulatory region 569445			936 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			1291 bp upstream