rs6388945 SNP Detail

Summary

• ID
  rs6388945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGCTTTTCCA
  GACATATCAG ACTATTTGTA TTAGAGCNAG CTGATTAACT TAGAAGTTCT CTCAGATGTA
  AAATGAGCCT AATGCCACTT ATCATCTGAA CAAGGTCACT GTGAAGAATG GCATGCATGT
  CTAGAATATA AAGTAACCAG CACAATTCCT GACCTACAAA GGGCTCAATA TATTGAGTAA
  GTATGTCCAA CAGGAAGANT GAATCTAATA AGCTCTCTAT TGNCCTCTTC TGTCTTTGGT
  R
  NATTATTCCC ATCCTGGGCA TTATTGGCCT GCCAAGCCCA NAtctacaag ccaaagaaag
  taaagattac cagcaaacca anagggcaaa ggcacaacgt ctctaatcaa ttgcagaagg
  ttaacaatcc tgagccacag taatgtcaga tctgtagctt ccaCCCATTG CTATAGCTTA
  TACTGATTTG TGATACTTTG CTTGAAAGTA NGAGCAAACT AATNATAATG GTTCGTTTAT
  ACTTGGCCCA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8795111	WI_WGS_2_164572634	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6388945					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482571 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569443	regulatory region 569443			within coordinates
Rr569444	regulatory region 569444			3 bp distal
Rr569445	regulatory region 569445			918 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			1309 bp upstream