rs6388976 SNP Detail

Summary

• ID
  rs6388976
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9528149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAGCTT TTATTCTTAC
  TGTGGTTTTG ACATTATGTG GAACAATGGT CACAGTGTTC AATAGGAAGC ATCTAAGCAT
  TAAGTAAAAA TTCTAGGTAT AGAAATTTAA AGCATTTGGA ATACATATTC TAAGTAAGGC
  AGTGTCATTT AGAAGACAGT GATTACTTGA TGAAGAGCTT GAACTGTCAG GGCTTTTGCG
  R
  TTCCCTTTGC TTGATTTGAC TATCCTTTAG TTACTAGAAA ATTGACTAGT AGATTGCTGC
  CAGCACAAAG TGGGAGGTAT CGTGACATGC CTATGTGACG CATATGGGTG GTTATGATCA
  TCAATCTAAA AACATTTCAA AATTTAAAAA GGTGAAGTGA AAATCCTGTT TAACAGCAAG
  AATTTTTACT TTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8795143	WI_WGS_15_9547685	WI	MOUSE	f	SNP							G		A
ss49390566	NES12654146	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6388976					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49390566	NES12654146	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9528149 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	within coordinates
Rr186	regulatory region 186	1677 bp proximal
Rr499183	regulatory region 499183	2 bp proximal
Rr499184	regulatory region 499184	1755 bp proximal
Tssr130645	transcription start site region 130645	987 bp downstream
Tssr130646	transcription start site region 130646	409 bp upstream
Tssr130647	transcription start site region 130647	427 bp upstream
Tssr130648	transcription start site region 130648	464 bp upstream
Tssr133701	transcription start site region 133701	11 bp upstream
Tssr133702	transcription start site region 133702	15 bp downstream
Tssr133703	transcription start site region 133703	1634 bp downstream
Tssr133704	transcription start site region 133704	1675 bp downstream
Tssr133705	transcription start site region 133705	1750 bp downstream
Tssr133706	transcription start site region 133706	1787 bp downstream
Tssr133707	transcription start site region 133707	1805 bp downstream
Tssr133708	transcription start site region 133708	1969 bp downstream