rs6388995 SNP Detail

Summary

• ID
  rs6388995
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCTGAAC AAGGTCACTG
  TGAAGAATGG CATGCATGTC TAGAATATAA AGTAACCAGC ACAATTCCTG ACCTACAAAG
  GGCTCAATAT ATTGAGTAAG TATGTCCAAC AGGAAGAGTG AATCTAATAA GCTCTCTATT
  GCCCTCTTCT GTCTTTGGTG GATTATTCCC ATCCTGGGCA TTATTGGCCT GCCAAGCCCA
  M
  ATCTACAAGC CAAAGAAAGT AAAGATTACC AGCAAACCAA CAGGGCAAAG GCACAACGTC
  TCTAATCAAT TGCAGAAGGT TAACAATCCT GAGCCACAGT AATGTCAGAT CTGTAGCTTC
  CACCCATTGC TATAGCTTAT ACTGATTTGT GATACTTTGC TTGAAAGTAC GAGCAAACTA
  ATTATAATGG TTCGTTTATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8795162	WI_WGS_2_164572675	WI	MOUSE	f	SNP			C	A
ss148207595	ENSMUSSNP4997411	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6388995					SNP	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482612 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397465	regulatory region 397465			1965 bp upstream
Rr569443	regulatory region 569443			within coordinates
Rr569444	regulatory region 569444			44 bp distal
Rr569445	regulatory region 569445			877 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			1350 bp upstream