rs6389515 SNP Detail

Summary

• ID
  rs6389515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9528254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAGCAT TTGGAATACA
  TATTCTAAGT AAGGCAGTGT CATTTAGAAG ACAGTGATTA CTTGATGAAG AGCTTGAACT
  GTCAGGGCTT TTGCGGTTCC CTTTGCTTGA TTTGACTATC CTTTAGTTAC TAGAAAATTG
  ACTAGTAGAT TGCTGCCAGC ACAAAGTGGG AGGTATCGTG ACATGCCTAT GTGACGCATA
  Y
  GGGTGGTTAT GATCATCAAT CTAAAAACAT TTCAAAATTT AAAAAGGTGA AGTGAAAATC
  CTGTTTAACA GCAAGAATTT TTACTTTTTT TTTTTTTTTG TAAGAAATAG CATGGCCAAG
  AGGGAAGCAT AGGGGCAAAG GATTGTACCA AACAGCAGCA TGGTTCTCGT GCTTCCTGCC
  AGCTATTTGC ACACATTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8795683	WI_WGS_15_9547790	WI	MOUSE	f	SNP							T	C
ss49390565	NES12654147	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T			T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6389515					SNP	T	T	C	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49390565	NES12654147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9528254 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	within coordinates
Rr186	regulatory region 186	1572 bp proximal
Rr499183	regulatory region 499183	within coordinates
Rr499184	regulatory region 499184	1650 bp proximal
Tssr130645	transcription start site region 130645	1092 bp downstream
Tssr130646	transcription start site region 130646	304 bp upstream
Tssr130647	transcription start site region 130647	322 bp upstream
Tssr130648	transcription start site region 130648	359 bp upstream
Tssr133701	transcription start site region 133701	116 bp upstream
Tssr133702	transcription start site region 133702	80 bp upstream
Tssr133703	transcription start site region 133703	1529 bp downstream
Tssr133704	transcription start site region 133704	1570 bp downstream
Tssr133705	transcription start site region 133705	1645 bp downstream
Tssr133706	transcription start site region 133706	1682 bp downstream
Tssr133707	transcription start site region 133707	1700 bp downstream
Tssr133708	transcription start site region 133708	1864 bp downstream
Tssr133709	transcription start site region 133709	1966 bp downstream