rs6389932 SNP Detail

Summary

• ID
  rs6389932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58597748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CAAAACAGTC
  TCAGGTAGAA CAATTACTTT CATTAAAAAA AATCTCAGAA ATATTAACAT TATTCCCACC
  TATAAGTTCA GAAAATGAAC TCCTTGACAG AGGTCTAGGT TAGAAAGAGG CATATAAATG
  AGACTGTGGG GAGTTTTGTA AGGGTTTCAG TGTTGGCAAC AGGATGTTAT AGCAGAACCA
  CACAATGTAA TGCTATCAGT CATTTAAAAT ACAGGAGATC AAGTCAAGTT TCAGGTGAGG
  R
  TATTATTAGT AAACCTGGTT GGCAGAGGAA AAAAAAAACA CTATCTCTGT GAGTATTAAA
  AAAAAGAAGC TTTCAGATAT AGACATGCAT GATTCCATTA ATTTAGCCGT GAGGATGTAA
  ACACAGGTCC TAAACAAACC ATTGGAGCCA TGGGAATGAG AGCTCGGACT TTGACTTGTG
  GTTTGCCCAC CCCACCCCAC CCCCCAGCAC AGGCAACTAA ATAAAATGCT GTCACTGGAG
  AGAGAACTAA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8796100	WI_WGS_3_59235370	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6389932					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58597748 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13205	CpG island 13205			405 bp proximal
Cpgi13206	CpG island 13206			927 bp proximal
Rr367441	regulatory region 367441			359 bp upstream
Rr577266	regulatory region 577266			95 bp proximal
Rr577267	regulatory region 577267			1000 bp proximal
Rr577268	regulatory region 577268			1712 bp proximal
Rr577269	regulatory region 577269			1945 bp proximal
Siah2	siah E3 ubiquitin protein ligase 2			Intron
				Noncoding-Transcript-Variant
Tssr33366	transcription start site region 33366			1681 bp downstream
Tssr33367	transcription start site region 33367			1729 bp downstream