rs6390176 SNP Detail

Summary

• ID
  rs6390176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43087019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCAGTGGG AAACAGACAC TCAGAAACAT CATCTTCCTT
  AGGTTATATC CATGTGACAC AGAGCTTCTG TATCCTGGCT GTCCTGTGGG GCCTGGTGTC
  Y
  GTGAGCTTCC TGGTTCTGTC TTGCATCCCA GCCCTGTCTG CTCCCGGCCG TGGCCCTCTG
  GTCTCAACTG TCATGGCTTT TTCTGCAGGT ATGAATGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8796344	WI_WGS_7_33037644	WI	MOUSE	f	SNP								T	C
ss51478223	NES13970393	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T			C	T	T	C	T	C	C	T
ss149072685	ENSMUSSNP5318089	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6390176					SNP	T	C	T	T	T	T	T	T	C	C	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478223	NES13970393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43087019 () rs orientation: forward

Symbol	Name	Function Class
Gm52993	predicted gene, 52993	1604 bp downstream
Lim2	lens intrinsic membrane protein 2	1599 bp downstream
Nkg7	natural killer cell group 7 sequence	within coordinates
Tssr2210	transcription start site region 2210	576 bp downstream
Tssr65999	transcription start site region 65999	614 bp downstream
Tssr66000	transcription start site region 66000	421 bp downstream
Tssr66001	transcription start site region 66001	within coordinates
Tssr66002	transcription start site region 66002	5 bp upstream