rs6390451 SNP Detail

Summary

• ID
  rs6390451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9528370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCTTTAG TTACTAGAAA
  ATTGACTAGT AGATTGCTGC CAGCACAAAG TGGGAGGTAT CGTGACATGC CTATGTGACG
  CATATGGGTG GTTATGATCA TCAATCTAAA AACATTTCAA AATTTAAAAA GGTGAAGTGA
  AAATCCTGTT TAACAGCAAG AATTTTTACT TTTTTTTTTT TTTTGTAAGA AATAGCATGG
  Y
  CAAGAGGGAA GCATAGGGGC AAAGGATTGT ACCAAACAGC AGCATGGTTC TCGTGCTTCC
  TGCCAGCTAT TTGCACACAT TTAACATGAG ATAATGACTC TCCCTCACCA AGTGACTCAT
  GCTCCGTCAT GCTGAAGAGT GTGACTCCTC TGATGATTCT CTTCATAAGA ACATGCAAGG
  GTTTTCCATC CTTGCTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8796622	WI_WGS_15_9547906	WI	MOUSE	f	SNP						C		T
ss49390564	NES12654149	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		T		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6390451					SNP	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49390564	NES12654149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9528370 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	within coordinates
Rr186	regulatory region 186	1456 bp proximal
Rr499183	regulatory region 499183	within coordinates
Rr499184	regulatory region 499184	1534 bp proximal
Tssr130645	transcription start site region 130645	1208 bp downstream
Tssr130646	transcription start site region 130646	188 bp upstream
Tssr130647	transcription start site region 130647	206 bp upstream
Tssr130648	transcription start site region 130648	243 bp upstream
Tssr133701	transcription start site region 133701	232 bp upstream
Tssr133702	transcription start site region 133702	196 bp upstream
Tssr133703	transcription start site region 133703	1413 bp downstream
Tssr133704	transcription start site region 133704	1454 bp downstream
Tssr133705	transcription start site region 133705	1529 bp downstream
Tssr133706	transcription start site region 133706	1566 bp downstream
Tssr133707	transcription start site region 133707	1584 bp downstream
Tssr133708	transcription start site region 133708	1748 bp downstream
Tssr133709	transcription start site region 133709	1850 bp downstream