rs6390548 SNP Detail

Summary

• ID
  rs6390548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9528437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTATGTG ACGCATATGG
  GTGGTTATGA TCATCAATCT AAAAACATTT CAAAATTTAA AAAGGTGAAG TGAAAATCCT
  GTTTAACAGC AAGAATTTTT ACTTTTTTTT TTTTTTTGTA AGAAATAGCA TGGCCAAGAG
  GGAAGCATAG GGGCAAAGGA TTGTACCAAA CAGCAGCATG GTTCTCGTGC TTCCTGCCAG
  Y
  TATTTGCACA CATTTAACAT GAGATAATGA CTCTCCCTCA CCAAGTGACT CATGCTCCGT
  CATGCTGAAG AGTGTGACTC CTCTGATGAT TCTCTTCATA AGAACATGCA AGGGTTTTCC
  ATCCTTGCTG ATTACAAAGT AAAGTCACAC AAATATCTAA GCTTAGGATG CACAACTAAA
  GGCATTTGAC TGAAGAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8796719	WI_WGS_15_9547973	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6390548					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9528437 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	within coordinates
Rr186	regulatory region 186	1389 bp proximal
Rr499183	regulatory region 499183	within coordinates
Rr499184	regulatory region 499184	1467 bp proximal
Tssr130645	transcription start site region 130645	1275 bp downstream
Tssr130646	transcription start site region 130646	121 bp upstream
Tssr130647	transcription start site region 130647	139 bp upstream
Tssr130648	transcription start site region 130648	176 bp upstream
Tssr133701	transcription start site region 133701	299 bp upstream
Tssr133702	transcription start site region 133702	263 bp upstream
Tssr133703	transcription start site region 133703	1346 bp downstream
Tssr133704	transcription start site region 133704	1387 bp downstream
Tssr133705	transcription start site region 133705	1462 bp downstream
Tssr133706	transcription start site region 133706	1499 bp downstream
Tssr133707	transcription start site region 133707	1517 bp downstream
Tssr133708	transcription start site region 133708	1681 bp downstream
Tssr133709	transcription start site region 133709	1783 bp downstream
Tssr133710	transcription start site region 133710	1960 bp downstream