rs6390755 SNP Detail

Summary

• ID
  rs6390755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109929576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAATTAAA AAAGGCAATG
  TACTTCAGTC TAACATTTTA TACTTTGAGT TATTTTATGT CGGTTGGTAA GAGTATTAGT
  TAAAATGCTC TCTTCATTTA ATCCATAATA TTAAAAGCCT AACTGTTTTT AAGCCTATTT
  CTAAATATCT ACTATTACTG TTGTCATTTT AAATTACACT TAATGGGTCT AAATGACAAC
  R
  GGCCTAATGT CTGGGAAAAC AGTAATATTC TTCAGCCTTT CTCTTCTGGG TGAAGGCACA
  ATATTTTCCA TCTAGGGATG CCTAGGGATG CATGGAGCTA TTTTGAGTCC CCATACTTTT
  CCTTGACTAT AACCACACAC ATTCGGGGTC ACCGATAAGT ACTAACAGAC ACTTTTGCCT
  AAGCAGTCAA TTCTTTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8796926	WI_WGS_3_110522250	WI	MOUSE	f	SNP							A		G
ss60432108	NES15931024	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6390755					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60432108	NES15931024	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109929576 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant
Rr583457	regulatory region 583457			375 bp proximal