rs6390861 SNP Detail

Summary

• ID
  rs6390861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118714112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCGCATG GCCATCGGTT
  ATCTGCTTAT GGCGGATCTA AAGTGCTCTC ACTTCTTAAG ACTCCTGCCT TAAAGCTCTG
  CGGGCGGCCG ATTGCAGCGA GGACTCCCGG GACCCGCTCA GTCAGCGCTG CGTGGAGCTC
  GCCTGACCCC TACCGGCCAT CCGCGGACTC GCAGGCGCGG TGACTTTCTG GACGCTCCAG
  Y
  TTCCCACTCG TGCTCTGGAT GCACGGTTTC CAAGACTGAA ATTTCCCCAG AATTTGTATT
  TTACTAAATG AGAACATTGA AAGATCACTA TCCACTATCA CCACCATCTC ATACAAGAAG
  GCCAAACAAA AACAGGGAGA CCATAAACAG CAAAGATGAG TGTGGTATTC TTTTAAAAAT
  TATGGTCAGA GTTTAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8797032	WI_WGS_2_119830866	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6390861					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118714112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	within coordinates
Ivd	isovaleryl coenzyme A dehydrogenase	724 bp downstream
Rr397218	regulatory region 397218	468 bp downstream
Rr397219	regulatory region 397219	within coordinates
Rr563359	regulatory region 563359	within coordinates
Rr563360	regulatory region 563360	40 bp distal