rs6391079 SNP Detail

Summary

• ID
  rs6391079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49675888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCAGGG CGAGCTTGGC
  CAGAGGGAGT AGAGAGCAGC GGGGCTGCGC AGGGACGCGT GCCGTGAGTT CCGGTGAGCG
  TGTGTGTCCC ATGCTCCCGT CTTTCAGGCC GGCCCAGGAC ACGAAGCCGG AAGAGAGCTG
  GCTGGAGGGA CGGGGGCCGT GAGCAGAGAG TGCAACCCGC GCAGCCCCGG GGACAGGCTG
  R
  TTCTTGGCGC TCTCCGCCGG AGCCTGCCCA GGGCTGGGTG TGAGGCTGGC GTCACGTCAA
  CGAGCAGAGG CGGCCAGGCG GGGCGGAGTG CGCGTGCGCG GGGCGGCGAG CACGCGCGCG
  CGCGCACCCC CGGGCAGCCT GGGCGGCCGC TCCTGCCTGT CACTGCTGCG GCGCTGCTGG
  TCGGTCGTTT CCCTTGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8797253	WI_WGS_16_49844094	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6391079					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49675888 () rs orientation: forward

Symbol	Name	Function Class
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	within coordinates
Cpgi8307	CpG island 8307	within coordinates
Gm4633	predicted gene 4633	479 bp upstream
Gm56621	predicted gene, 56621	226 bp downstream
Gm60685	predicted gene, 60685	712 bp upstream
Rr370104	regulatory region 370104	519 bp upstream
Rr516741	regulatory region 516741	1017 bp distal
Rr516742	regulatory region 516742	149 bp distal
Rr516743	regulatory region 516743	35 bp distal
Rr516744	regulatory region 516744	within coordinates
Rr516745	regulatory region 516745	636 bp proximal
Tssr4899	transcription start site region 4899	409 bp downstream
Tssr4900	transcription start site region 4900	259 bp downstream
Tssr4901	transcription start site region 4901	138 bp downstream
Tssr4902	transcription start site region 4902	28 bp downstream
Tssr4903	transcription start site region 4903	242 bp upstream
Tssr138724	transcription start site region 138724	1166 bp downstream
Tssr138725	transcription start site region 138725	981 bp downstream
Tssr138726	transcription start site region 138726	425 bp downstream
Tssr138727	transcription start site region 138727	395 bp downstream
Tssr138728	transcription start site region 138728	165 bp downstream
Tssr138729	transcription start site region 138729	99 bp upstream
Tssr138730	transcription start site region 138730	220 bp upstream
Tssr138731	transcription start site region 138731	547 bp upstream
Tssr138732	transcription start site region 138732	693 bp upstream
Tssr138733	transcription start site region 138733	781 bp upstream
Tssr138734	transcription start site region 138734	1033 bp upstream
Tssr138735	transcription start site region 138735	1071 bp upstream
Tssr141348	transcription start site region 141348	213 bp upstream
Tssr141349	transcription start site region 141349	within coordinates
Tssr141350	transcription start site region 141350	307 bp downstream
Tssr141351	transcription start site region 141351	591 bp downstream
Tssr141352	transcription start site region 141352	822 bp downstream