rs6391449 SNP Detail

Summary

• ID
  rs6391449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118714202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT GAGAACATTG AAAGATCACT
  R
  TCCACTATCA CCACCATCTC ATACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8797624	WI_WGS_2_119830956	WI	MOUSE	f	SNP			A	G
ss147316256	ENSMUSSNP600432	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			G
ss320472453	CHEV_2_118709457	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6391449					SNP	G	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118714202 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	within coordinates
Ivd	isovaleryl coenzyme A dehydrogenase	814 bp downstream
Rr397218	regulatory region 397218	558 bp downstream
Rr397219	regulatory region 397219	within coordinates
Rr563359	regulatory region 563359	16 bp distal
Rr563360	regulatory region 563360	130 bp distal