rs6391526 SNP Detail

Summary

• ID
  rs6391526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58598016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAC TAATAACGCT CTTAAGTGTC
  Y
  GCGTTGAGTC CTTGTGGACT CGAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8797701	WI_WGS_3_59235638	WI	MOUSE	f	SNP	T	C
ss135208185	ENSMUSSNP6311764	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss320783423	CHEV_3_58494517	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6391526					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58598016 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930593A02Rik	RIKEN cDNA 4930593A02 gene			1994 bp upstream
Cpgi13205	CpG island 13205			137 bp proximal
Cpgi13206	CpG island 13206			659 bp proximal
Rr367441	regulatory region 367441			91 bp upstream
Rr577266	regulatory region 577266			within coordinates
Rr577267	regulatory region 577267			732 bp proximal
Rr577268	regulatory region 577268			1444 bp proximal
Rr577269	regulatory region 577269			1677 bp proximal
Rr577270	regulatory region 577270			1795 bp proximal
Siah2	siah E3 ubiquitin protein ligase 2			Intron
				Noncoding-Transcript-Variant
Tssr29217	transcription start site region 29217			1895 bp upstream
Tssr33366	transcription start site region 33366			1413 bp downstream
Tssr33367	transcription start site region 33367			1461 bp downstream
Tssr33368	transcription start site region 33368			1796 bp downstream
Tssr33369	transcription start site region 33369			1830 bp downstream