rs6392163 SNP Detail

Summary

• ID
  rs6392163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106146949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGTTAAA AGTAGAGGCT
  AGGAAGTAGA GTGCAATAAC TCGTATCCTA AACGCTAGGA AGCATCAACC AGAAGTTCTA
  TATCTCTTCA CAAAACTAGT GACCTCCAGT AGAGCCTCTA CTAATACAGC CACTGTGTTT
  GTATCGCCAC ACACCCCGCC CATTGACCCG GAACTGTTCT CGGTGGTGAC CCAGGGCGCA
  Y
  GCTTTCGCCT CCGCGCCTGC GCGATAGAGT GACTTGGATG CCGGCGATCC CTGCCGAGAG
  AGGGAAGATG GCGCTTGATG GGCCAGAGCA GGTAAGGATT CTGCCGCGGC GGCTGGGCGG
  CATCCAAGCT GAGTGTGGAG TGCACAAAAT CTGAAGTGAG GGGTGGCCAC GAGCGAGAGG
  GTCCAGTGGA TCAGGGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8798338	WI_WGS_11_107043571	WI	MOUSE	f	SNP							T		C
ss37271462	NES08546368	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6392163					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271462	NES08546368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106146949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	within coordinates
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	44 bp upstream
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	62 bp upstream
Rr403040	regulatory region 403040	within coordinates
Tssr105507	transcription start site region 105507	1 bp upstream
Tssr105508	transcription start site region 105508	17 bp upstream
Tssr105509	transcription start site region 105509	50 bp upstream
Tssr111306	transcription start site region 111306	286 bp upstream
Tssr111307	transcription start site region 111307	20 bp upstream