rs6392437 SNP Detail

Summary

• ID
  rs6392437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:72836893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAGAGCC TTGAAGGTCA
  AATTGACACC AGAATCTCAA ATACACTCAG AAATAAATGC CTATACATTT GTCAGTTGAT
  GACCGGCTCT GCCGGACCAA ATGCCTTTTC AGCTATAATT CCACAGGTGC TTCAGAGCAC
  TATCCCAGCA TGGCCTTGTC CTGGACTGCA TGGGGTTCAT TCTTCATCCT CAATGGTCAG
  R
  AGCCACTTCC AACAGGTGCC CAGGGAGGAC AAAGGATCCA GGTATGCTTG TCTAGTTCAG
  GTTTGAGGTT ATCAGTTATT TCTTTGTAGC TTCATAGCTT GAAATCTAAA GAGAAGGCTT
  AGATAGGTTT CTACTGTACC TGCTTGTATT CTAATGCCAA TTACGTTCCC CAAAAACATG
  TTTGAAGGAG AACACACGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8798612	WI_WGS_7_62633975	WI	MOUSE	f	SNP							G		A
ss51500058	NES13955892	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6392437					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51500058	NES13955892	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:72836893 () rs orientation: forward

Symbol	Name	Function Class
Gm20083	predicted gene, 20083	within coordinates
Gm28746	predicted gene 28746	1752 bp upstream
Tssr67187	transcription start site region 67187	1370 bp downstream
Tssr67188	transcription start site region 67188	1336 bp downstream