rs6392478 SNP Detail

Summary

• ID
  rs6392478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26679381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGACTCTTA GGAAATGTCT
  AGAGGCTGAG ATCTACCATT TTACCTGCCC TTTTCTGGCT AATTGCATGT CACTCCCTCA
  ATCTTAAGTT AGAGGACATC ACCCAGAGAA AACTTACTGT GCTCCAAATA TAGATCAACT
  GTTTTCACAA TGGTTGCTCT GTTTCTCTGT GTGGCATCAC AACCTCCATC CTCCTTACAT
  R
  TACACATAGG AACACACTCA AGGCTATACC CAACTAAATA GTCTTGAGTG AACAGAGAGC
  TCCTAAGCTA ATCCCACAGA CTTTTGCTAT ACAAGTCCAT ACTTTATTTC CAAGGAAATG
  TGGATGACAG GAAATCTTAT AACATAGGCT TAGGCAGTAT ATGCATTTTA AATCTGGAGT
  TTAAATTACG ATCATCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8798654	WI_WGS_3_26451198	WI	MOUSE	f	SNP								G		A
ss45451961	mCV22809609	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G			G
ss51442668	NES14434694	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		G		G	G	G	A	G	G	A	G
ss134696766	ENSMUSSNP1365308	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6392478					SNP	G	G	A	A	G	G	A	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442668	NES14434694	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26679381 () rs orientation: forward

Symbol	Name	Function Class
Gm55656	predicted gene, 55656	953 bp downstream
Gm65182	predicted gene, 65182	within coordinates