rs6392984 SNP Detail

Summary

• ID
  rs6392984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41043179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATTGTC ATAGAAATTG
  TCTTTTTGAA TTTGTATTTT GATTTCCCCA AAGAATTTTC CCAGCTTCAA TATGTTTTGT
  TTAGCATTTT TCACAATAAA AGATTTTTTT ATTTTAAAAG TTACAATTTT TAAAGTGTCC
  TTTAACCATA AGTTCTAAAT ATCAAGCATT TCCTTTTGAT TGAGTTATCA TTACAGTTAT
  Y
  AGTAGCATAT GATAGGTCAT ACTTAGATTG TATATTTTTG CAAATAATTA CCAAAGAGAA
  TTTTATAGGA AATTTCTCTT TTAGGGATTA AAGTTCTCAC CACCCCCAAT TCAGGTATTT
  ATAGATAAAT ATAATTTTGT TTTGTTTTCT GTTTTTCAAG ACACAGTTTG TCTGTGGCTC
  CCTGGGTGTC CTGGAACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8799160	WI_WGS_3_41071044	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6392984					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41043179 () rs orientation: forward

Symbol	Name	Function Class
Tssr28989	transcription start site region 28989	1274 bp upstream