rs6393052 SNP Detail

Summary

• ID
  rs6393052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41043205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTTGTA TTTTGATTTC
  CCCAAAGAAT TTTCCCAGCT TCAATATGTT TTGTTTAGCA TTTTTCACAA TAAAAGATTT
  TTTTATTTTA AAAGTTACAA TTTTTAAAGT GTCCTTTAAC CATAAGTTCT AAATATCAAG
  CATTTCCTTT TGATTGAGTT ATCATTACAG TTATCAGTAG CATATGATAG GTCATACTTA
  K
  ATTGTATATT TTTGCAAATA ATTACCAAAG AGAATTTTAT AGGAAATTTC TCTTTTAGGG
  ATTAAAGTTC TCACCACCCC CAATTCAGGT ATTTATAGAT AAATATAATT TTGTTTTGTT
  TTCTGTTTTT CAAGACACAG TTTGTCTGTG GCTCCCTGGG TGTCCTGGAA CTCACTTCGT
  AGACCAGGCT AGCTTTGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8799229	WI_WGS_3_41071070	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6393052					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41043205 () rs orientation: forward

Symbol	Name	Function Class
Tssr28989	transcription start site region 28989	1248 bp upstream