rs6393311 SNP Detail

Summary

• ID
  rs6393311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10109780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCTTCT TAAAGTATAA
  CTTCGGGCAC ACTAGGGACA TTAGAGTACA TTAGTATCTT AAGTTCTTTC TGAGAAGCTT
  GTGTAAGCTT GTTCCAGTGG TCACAATACA CAGCCACTCG AAACATACAG AATAACATGT
  TGAAATGGTA ATGAAAGCCC AGGACAGAGA GTTGACCAGA CTGCTGGTGC GGACATTCCT
  Y
  CTCTCACATC CACACTTCGT GACTGGAGAC CGTCCTGGGC TTGGATGGCT GGGATTTAGC
  CTGGGAGTGG TCACATTTCA GGAATCCCTG GGCGCAGCAG CGGGTGCACC GGGTGGCCTC
  CGGGGCTGCA GGGGGCGCCC TCGGCCGCGC GGCCTCCGCC AGCAGCCCGA GGGGCGGGGC
  CGCGCCTGGC CGTTGGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8799488	WI_WGS_1_10092890	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6393311					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10109780 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	1396 bp upstream
Cpgi31	CpG island 31	1112 bp distal
Cpgi32	CpG island 32	within coordinates
Cspp1	centrosome and spindle pole associated protein 1	within coordinates
Rr395966	regulatory region 395966	443 bp upstream
Rr407692	regulatory region 407692	1639 bp distal
Rr407693	regulatory region 407693	1283 bp distal
Rr407694	regulatory region 407694	803 bp distal
Rr407695	regulatory region 407695	within coordinates
Rr407696	regulatory region 407696	121 bp proximal
Rr407697	regulatory region 407697	241 bp proximal
Tssr4	transcription start site region 4	1327 bp downstream
Tssr5924	transcription start site region 5924	207 bp upstream
Tssr5925	transcription start site region 5925	242 bp upstream
Tssr5926	transcription start site region 5926	269 bp upstream
Tssr10955	transcription start site region 10955	1661 bp upstream
Tssr10956	transcription start site region 10956	1624 bp upstream
Tssr10957	transcription start site region 10957	1587 bp upstream
Tssr10958	transcription start site region 10958	1386 bp upstream
Tssr10959	transcription start site region 10959	452 bp downstream