rs6393332 SNP Detail

Summary

• ID
  rs6393332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106147141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCGCATG CTTTCGCCTC
  CGCGCCTGCG CGATAGAGTG ACTTGGATGC CGGCGATCCC TGCCGAGAGA GGGAAGATGG
  CGCTTGATGG GCCAGAGCAG GTAAGGATTC TGCCGCGGCG GCTGGGCGGC ATCCAAGCTG
  AGTGTGGAGT GCACAAAATC TGAAGTGAGG GGTGGCCACG AGCGAGAGGG TCCAGTGGAT
  Y
  AGGGGTGGGT GGATCACGTC AGACCGGACT CTGCCTGGGA CTGGATCTGC TGTGTCAGCG
  CCGCCCTGAG GAAAGCAGGA CAGGGGTGGG TGGAAACTGA ATGAAGCTGG CAAGCCGGAA
  TGGCCTGGGC TTCGACCTGG ACTTGGTCCC TCTGTTCTGC CTTTGTCTGT AGTAGTTAAA
  CCCTGGGGAT GTGTAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8799509	WI_WGS_11_107043763	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6393332					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106147141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	within coordinates
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	236 bp upstream
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	within coordinates
Rr403040	regulatory region 403040	55 bp downstream
Tssr105507	transcription start site region 105507	180 bp downstream
Tssr105508	transcription start site region 105508	143 bp downstream
Tssr105509	transcription start site region 105509	126 bp downstream
Tssr111306	transcription start site region 111306	478 bp upstream
Tssr111307	transcription start site region 111307	212 bp upstream