rs6393382 SNP Detail

Summary

• ID
  rs6393382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106147171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATAGAGTG ACTTGGATGC
  CGGCGATCCC TGCCGAGAGA GGGAAGATGG CGCTTGATGG GCCAGAGCAG GTAAGGATTC
  TGCCGCGGCG GCTGGGCGGC ATCCAAGCTG AGTGTGGAGT GCACAAAATC TGAAGTGAGG
  GGTGGCCACG AGCGAGAGGG TCCAGTGGAT CAGGGGTGGG TGGATCACGT CAGACCGGAC
  Y
  CTGCCTGGGA CTGGATCTGC TGTGTCAGCG CCGCCCTGAG GAAAGCAGGA CAGGGGTGGG
  TGGAAACTGA ATGAAGCTGG CAAGCCGGAA TGGCCTGGGC TTCGACCTGG ACTTGGTCCC
  TCTGTTCTGC CTTTGTCTGT AGTAGTTAAA CCCTGGGGAT GTGTAGCTCT AGCCACAGGG
  CAGTGCGCTC GGTGGGTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8799559	WI_WGS_11_107043793	WI	MOUSE	f	SNP							T		C
ss37271461	NES08546370	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6393382					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271461	NES08546370	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106147171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	within coordinates
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	266 bp upstream
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	within coordinates
Rr403040	regulatory region 403040	85 bp downstream
Tssr105507	transcription start site region 105507	210 bp downstream
Tssr105508	transcription start site region 105508	173 bp downstream
Tssr105509	transcription start site region 105509	156 bp downstream
Tssr111306	transcription start site region 111306	508 bp upstream
Tssr111307	transcription start site region 111307	242 bp upstream