rs6393835 SNP Detail

Summary

• ID
  rs6393835
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40366071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA AATGTGAATA CGTCACCTCT
  M
  CATAGGCAAC ATGGACCTGT ACCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8800012	WI_WGS_9_40651643	WI	MOUSE	f	SNP						C		A
ss46384521	mCV24918373	ABI	CRAMUS_MOUSE	f	SNP	A					C			A
ss50677592	NES14010792	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A		A	A	A		C	A	A	A		A
ss136330421	ENSMUSSNP2949011	ENSEMBL	ENSEMBL_Sanger	f	SNP	A								A
ss322916240	CHEV_9_40262360	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6393835					SNP	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677592	NES14010792	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40366071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	377 bp proximal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	629 bp proximal
Rr676840	regulatory region 676840	885 bp proximal
Rr676841	regulatory region 676841	1060 bp proximal
Tssr84449	transcription start site region 84449	518 bp upstream
Tssr84450	transcription start site region 84450	1116 bp upstream
Tssr88934	transcription start site region 88934	567 bp downstream
Tssr88935	transcription start site region 88935	643 bp downstream
Tssr88936	transcription start site region 88936	668 bp downstream
Tssr88937	transcription start site region 88937	731 bp downstream
Tssr88938	transcription start site region 88938	999 bp downstream
Tssr88939	transcription start site region 88939	1006 bp downstream
Tssr88940	transcription start site region 88940	1062 bp downstream
Tssr88941	transcription start site region 88941	1344 bp downstream
Tssr88942	transcription start site region 88942	1362 bp downstream
Tssr88943	transcription start site region 88943	1377 bp downstream
Tssr88944	transcription start site region 88944	1420 bp downstream
Tssr88945	transcription start site region 88945	1455 bp downstream
Tssr88946	transcription start site region 88946	1537 bp downstream
Tssr88947	transcription start site region 88947	1565 bp downstream
Tssr88948	transcription start site region 88948	1612 bp downstream