rs6393846 SNP Detail

Summary

• ID
  rs6393846
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106147208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGAAGA TGGCGCTTGA
  TGGGCCAGAG CAGGTAAGGA TTCTGCCGCG GCGGCTGGGC GGCATCCAAG CTGAGTGTGG
  AGTGCACAAA ATCTGAAGTG AGGGGTGGCC ACGAGCGAGA GGGTCCAGTG GATCAGGGGT
  GGGTGGATCA CGTCAGACCG GACTCTGCCT GGGACTGGAT CTGCTGTGTC AGCGCCGCCC
  K
  GAGGAAAGCA GGACAGGGGT GGGTGGAAAC TGAATGAAGC TGGCAAGCCG GAATGGCCTG
  GGCTTCGACC TGGACTTGGT CCCTCTGTTC TGCCTTTGTC TGTAGTAGTT AAACCCTGGG
  GATGTGTAGC TCTAGCCACA GGGCAGTGCG CTCGGTGGGT ATATGGCCCC TTGAGACTCC
  TAAAAGTCCT CGAAGGTAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8800023	WI_WGS_11_107043830	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6393846					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106147208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	2 bp distal
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	303 bp upstream
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	within coordinates
Rr403040	regulatory region 403040	122 bp downstream
Tssr105507	transcription start site region 105507	247 bp downstream
Tssr105508	transcription start site region 105508	210 bp downstream
Tssr105509	transcription start site region 105509	193 bp downstream
Tssr111306	transcription start site region 111306	545 bp upstream
Tssr111307	transcription start site region 111307	279 bp upstream