rs6393865 SNP Detail

Summary

• ID
  rs6393865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33685699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACA ACTCTCAGGT CATGCTCCCA
  Y
  TGCTAAGAGA AGTCAGAGAA GGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8800042	WI_WGS_17_32568649	WI	MOUSE	f	SNP		C	T
ss145489115	ENSMUSSNP4349522	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss325366066	CHEV_17_33603670	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6393865					SNP	T	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33685699 () rs orientation: forward

Symbol	Name	Function Class
Nfilz	NFIL3 like basic leucine zipper	1125 bp downstream