rs6394099 SNP Detail

Summary

• ID
  rs6394099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26679617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGTCTT GAGTGAACAG
  AGAGCTCCTA AGCTAATCCC ACAGACTTTT GCTATACAAG TCCATACTTT ATTTCCAAGG
  AAATGTGGAT GACAGGAAAT CTTATAACAT AGGCTTAGGC AGTATATGCA TTTTAAATCT
  GGAGTTTAAA TTACGATCAT CTCTCAGCAT GTGGAGTTCA TAGGACTATA GACCTGGGAC
  R
  TGTTTTAACA GGATTGTGCC CAGGCAGGCC TAAAACTGAG AGCCAGAACA CTGGTTTCCT
  GTCGTCAGTT ATAAGGTCCA TCAACTAGTG ATATCCAAGA GAAGCCTCAC CAATCACAGA
  TGCTCATGTG TTGCTCGTAA TCTCTGGTTG TCTAGTTTAT ACAGTCTATG AACTAAGTAC
  GTAAGACTTT AATAAGAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8800276	WI_WGS_3_26451434	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6394099					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26679617 () rs orientation: forward

Symbol	Name	Function Class
Gm55656	predicted gene, 55656	717 bp downstream
Gm65182	predicted gene, 65182	within coordinates