rs6394261 SNP Detail

Summary

• ID
  rs6394261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102491026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATGTGCTC AAACATATCT CTAGAATTAC ATATTAGGAG
  CCCACATGAC TTAACATCAG CACACTTCTG TGTTTGGTTT TAAAGGCTTT CATCTTAGAA
  Y
  GGGTATAAAG GTATTTCAGG CTATCTACAG GACCCTTCCT GAATTATTTC TGCCTTTAGA
  GTCTCAGTTG GAAAACATCT TTGAAAAATA TTGTCTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8800438	WI_WGS_2_103483039	WI	MOUSE	f	SNP			T	C
ss45211932	mCV23733783	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147119815	ENSMUSSNP3771202	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320439913	CHEV_2_102500838	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6394261					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102491026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	926 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561714	regulatory region 561714	1869 bp distal
Rr561715	regulatory region 561715	1390 bp distal
Rr561716	regulatory region 561716	605 bp distal
Rr561717	regulatory region 561717	1616 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19102	transcription start site region 19102	1986 bp downstream
Tssr19103	transcription start site region 19103	1939 bp downstream
Tssr19104	transcription start site region 19104	1917 bp downstream
Tssr19105	transcription start site region 19105	1847 bp downstream
Tssr19106	transcription start site region 19106	1829 bp downstream
Tssr19107	transcription start site region 19107	1809 bp downstream
Tssr19108	transcription start site region 19108	1773 bp downstream
Tssr19109	transcription start site region 19109	1731 bp downstream
Tssr19110	transcription start site region 19110	1449 bp downstream