rs6394361 SNP Detail

Summary

• ID
  rs6394361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40366172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACAGCA AACATCTCCC
  TAGCAAAACT GAAGCTGGCA CGGTGATCGA TCGTGAGATG TGTCCGTGAT GTGGTAGAAA
  ATGTGAATAC GTCACCTCTC CATAGGCAAC ATGGACCTGT ACCAGCAGGG TAGTGTAGGA
  AAAAGAAAAT GACAAAAAGT GAAATGGGAT TCGGAAGTCC ATGTGGAGGC GTCACTTAAA
  Y
  TTCTGTCACT AGTCTCCCGA CACCTCCACC TGTACAATGG AATCATAGCC TAATACTATC
  TACCTAATTT CTCCAAATTC CATCCTCAGG TGAAGCCCTC ACCACAGACA GTAGTCTGCG
  CACAGTAAGG GCTTAAGAGA TAATAAAAGA TAACACTGTA TTGGCCATTT TGCTGTGAGG
  GTCAAGAAAT GAAACGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8800538	WI_WGS_9_40651744	WI	MOUSE	f	SNP						C		T
ss50677591	NES14010793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C		C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6394361					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677591	NES14010793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40366172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	276 bp proximal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	528 bp proximal
Rr676840	regulatory region 676840	784 bp proximal
Rr676841	regulatory region 676841	959 bp proximal
Tssr84449	transcription start site region 84449	417 bp upstream
Tssr84450	transcription start site region 84450	1015 bp upstream
Tssr88934	transcription start site region 88934	466 bp downstream
Tssr88935	transcription start site region 88935	542 bp downstream
Tssr88936	transcription start site region 88936	567 bp downstream
Tssr88937	transcription start site region 88937	630 bp downstream
Tssr88938	transcription start site region 88938	898 bp downstream
Tssr88939	transcription start site region 88939	905 bp downstream
Tssr88940	transcription start site region 88940	961 bp downstream
Tssr88941	transcription start site region 88941	1243 bp downstream
Tssr88942	transcription start site region 88942	1261 bp downstream
Tssr88943	transcription start site region 88943	1276 bp downstream
Tssr88944	transcription start site region 88944	1319 bp downstream
Tssr88945	transcription start site region 88945	1354 bp downstream
Tssr88946	transcription start site region 88946	1436 bp downstream
Tssr88947	transcription start site region 88947	1464 bp downstream
Tssr88948	transcription start site region 88948	1511 bp downstream