rs6394555 SNP Detail

Summary

• ID
  rs6394555
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9068274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAACTGG CACGGGATAC
  TGAAAGGACA CAGTTTACAA CAGCCTAGCT CTGCATTCTT GACCACGTCC ACACGGCCAT
  TCATCTCTGG TACATTCCTT CATCATTTCT AGAAAAATGG ACTTGGACCC TGGCACTAGA
  GGTGACCTTG GGTAGCCATA CAGCGACTTC CAGATCTTTT CTTCGACAGT GGAACAGAGA
  K
  AGCAGCTTGG GTATGATTTC ATCTGTAGTT AGGGAGGCTA TGGAGCTACA GGAATGGCTC
  TGGATAACTT AAAATGGTCA GTTATCCCTA AAAGAAAGGA TAATAGAAGG TGGTGGTTCC
  CAGGCAACTT TTCCGGGTTC GGGTTGAGGG AATGGACGCT AGAGAAGGTG TGGTCGGGGC
  GTGTTCGGGC GAGCAGGTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8800732	WI_WGS_11_9027196	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6394555					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9068274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	78 bp proximal
Rr385585	regulatory region 385585	210 bp downstream
Rr442635	regulatory region 442635	1777 bp distal
Rr442636	regulatory region 442636	within coordinates
Rr442637	regulatory region 442637	244 bp proximal
Tssr3423	transcription start site region 3423	141 bp downstream
Tssr3424	transcription start site region 3424	133 bp downstream
Tssr100322	transcription start site region 100322	284 bp downstream
Tssr100323	transcription start site region 100323	257 bp downstream
Tssr100324	transcription start site region 100324	183 bp downstream
Tssr100325	transcription start site region 100325	262 bp upstream
Tssr100326	transcription start site region 100326	297 bp upstream
Tssr100327	transcription start site region 100327	345 bp upstream
Tssr100328	transcription start site region 100328	949 bp upstream
Tssr100329	transcription start site region 100329	1005 bp upstream
Tssr100330	transcription start site region 100330	1782 bp upstream
Upp1	uridine phosphorylase 1	within coordinates