rs6394816 SNP Detail

Summary

• ID
  rs6394816
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37087422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA TTCCAGATTC TGGGCTCCTA
  M
  CCACTTGGAA GTGATGCCTT TTGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss8800993	WI_WGS_9_37354812	WI	MOUSE	f	SNP	A			C
ss46401846	mCV24873979	ABI	CRAMUS_MOUSE	f	SNP		A	A	C	A
ss136308992	ENSMUSSNP1900634	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss322906193	CHEV_9_36983711	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs6394816					SNP	A	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37087422 () rs orientation: forward

Symbol	Name	Function Class
Gm67648	predicted gene, 67648	within coordinates
Rr401317	regulatory region 401317	961 bp upstream
Rr676635	regulatory region 676635	within coordinates
Rr676636	regulatory region 676636	851 bp proximal
Rr676637	regulatory region 676637	1133 bp proximal
Rr676638	regulatory region 676638	1278 bp proximal