rs6394835 SNP Detail

Summary

• ID
  rs6394835
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37087436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG CTCCTACCCA CTTGGAAGTG
  M
  TGCCTTTTGA GGGACTGGTG AAGAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss8801012	WI_WGS_9_37354826	WI	MOUSE	f	SNP	C						A
ss46306857	mCV24873989	ABI	CRAMUS_MOUSE	f	SNP		C	C				A		C
ss61379708	NES16766886	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	C	A	A		A		C
ss136308995	ENSMUSSNP372982	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss322906194	CHEV_9_36983725	CHEVERUD	SCREENING_POP	f	SNP												A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs6394835					SNP	C	C	C	C	C	C	A	C	C	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379708	NES16766886	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37087436 () rs orientation: forward

Symbol	Name	Function Class
Gm67648	predicted gene, 67648	within coordinates
Rr401317	regulatory region 401317	947 bp upstream
Rr676635	regulatory region 676635	within coordinates
Rr676636	regulatory region 676636	837 bp proximal
Rr676637	regulatory region 676637	1119 bp proximal
Rr676638	regulatory region 676638	1264 bp proximal