rs6394946 SNP Detail

Summary

• ID
  rs6394946
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37087501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGC TCCTCAGGAA GTAGATTAGA
  K
  AGGCCTGTCA CGAGGTCCTT GGAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss8801125	WI_WGS_9_37354891	WI	MOUSE	f	SNP	T							G
ss46327741	mCV24873990	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		T
ss61379706	NES16766888	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	G	T		T	T	G	G		G	G		T
ss136308998	ENSMUSSNP811344	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss322906195	CHEV_9_36983790	CHEVERUD	SCREENING_POP	f	SNP													G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs6394946					SNP	T	T	T	T	T	G	T	G	T	T	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379706	NES16766888	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37087501 () rs orientation: forward

Symbol	Name	Function Class
Gm67648	predicted gene, 67648	within coordinates
Rr401317	regulatory region 401317	882 bp upstream
Rr676635	regulatory region 676635	within coordinates
Rr676636	regulatory region 676636	772 bp proximal
Rr676637	regulatory region 676637	1054 bp proximal
Rr676638	regulatory region 676638	1199 bp proximal