rs6394991 SNP Detail

Summary

• ID
  rs6394991
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9068304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTACAA CAGCCTAGCT
  CTGCATTCTT GACCACGTCC ACACGGCCAT TCATCTCTGG TACATTCCTT CATCATTTCT
  AGAAAAATGG ACTTGGACCC TGGCACTAGA GGTGACCTTG GGTAGCCATA CAGCGACTTC
  CAGATCTTTT CTTCGACAGT GGAACAGAGA TAGCAGCTTG GGTATGATTT CATCTGTAGT
  W
  AGGGAGGCTA TGGAGCTACA GGAATGGCTC TGGATAACTT AAAATGGTCA GTTATCCCTA
  AAAGAAAGGA TAATAGAAGG TGGTGGTTCC CAGGCAACTT TTCCGGGTTC GGGTTGAGGG
  AATGGACGCT AGAGAAGGTG TGGTCGGGGC GTGTTCGGGC GAGCAGGTCC GGGTGCTATC
  AGCTGAGCCC TCCAGCGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8801170	WI_WGS_11_9027226	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6394991					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9068304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	48 bp proximal
Rr385585	regulatory region 385585	240 bp downstream
Rr442635	regulatory region 442635	1807 bp distal
Rr442636	regulatory region 442636	within coordinates
Rr442637	regulatory region 442637	214 bp proximal
Tssr3423	transcription start site region 3423	171 bp downstream
Tssr3424	transcription start site region 3424	163 bp downstream
Tssr100322	transcription start site region 100322	314 bp downstream
Tssr100323	transcription start site region 100323	287 bp downstream
Tssr100324	transcription start site region 100324	213 bp downstream
Tssr100325	transcription start site region 100325	232 bp upstream
Tssr100326	transcription start site region 100326	267 bp upstream
Tssr100327	transcription start site region 100327	315 bp upstream
Tssr100328	transcription start site region 100328	919 bp upstream
Tssr100329	transcription start site region 100329	975 bp upstream
Tssr100330	transcription start site region 100330	1752 bp upstream
Upp1	uridine phosphorylase 1	within coordinates