rs6395025 SNP Detail

Summary

• ID
  rs6395025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9068327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTTGAC CACGTCCACA
  CGGCCATTCA TCTCTGGTAC ATTCCTTCAT CATTTCTAGA AAAATGGACT TGGACCCTGG
  CACTAGAGGT GACCTTGGGT AGCCATACAG CGACTTCCAG ATCTTTTCTT CGACAGTGGA
  ACAGAGATAG CAGCTTGGGT ATGATTTCAT CTGTAGTTAG GGAGGCTATG GAGCTACAGG
  R
  ATGGCTCTGG ATAACTTAAA ATGGTCAGTT ATCCCTAAAA GAAAGGATAA TAGAAGGTGG
  TGGTTCCCAG GCAACTTTTC CGGGTTCGGG TTGAGGGAAT GGACGCTAGA GAAGGTGTGG
  TCGGGGCGTG TTCGGGCGAG CAGGTCCGGG TGCTATCAGC TGAGCCCTCC AGCGGAGCCA
  AAGCCAGGCG GTGACCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8801204	WI_WGS_11_9027249	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6395025					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9068327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	25 bp proximal
Rr385585	regulatory region 385585	263 bp downstream
Rr442635	regulatory region 442635	1830 bp distal
Rr442636	regulatory region 442636	within coordinates
Rr442637	regulatory region 442637	191 bp proximal
Tssr3423	transcription start site region 3423	194 bp downstream
Tssr3424	transcription start site region 3424	186 bp downstream
Tssr100322	transcription start site region 100322	337 bp downstream
Tssr100323	transcription start site region 100323	310 bp downstream
Tssr100324	transcription start site region 100324	236 bp downstream
Tssr100325	transcription start site region 100325	209 bp upstream
Tssr100326	transcription start site region 100326	244 bp upstream
Tssr100327	transcription start site region 100327	292 bp upstream
Tssr100328	transcription start site region 100328	896 bp upstream
Tssr100329	transcription start site region 100329	952 bp upstream
Tssr100330	transcription start site region 100330	1729 bp upstream
Upp1	uridine phosphorylase 1	within coordinates