rs6395451 SNP Detail

Summary

• ID
  rs6395451
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106107514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCCCGT AGGGTTCCGT
  CCGTCGGGTA GACGTCACTT TGATCGGATG CTCCGGAAGC TAAAGGTGGC CATAGTCTAT
  GGGGCCATGT GGACAGAGGC ATGAAGGGAA ATGTTGCCCG AGTCGTGGGT TTTTTGTGTT
  GCTTTGGTTT TTGGCAAGGG ACAAGAGCTA AGGGAAGGTG GACATTCTTA TGTAAATGAA
  K
  TTTCCAATCA ACACCTTATT ACCTTGAGTT TTTCGGGCGG TTCCCCATCG CCGCGGCTCT
  CTTCATTGCA GACTCCCTCA CTACACGACC CAGACACAAT CCTCACCCAG GACCAGATTC
  CCGTCCGGGG TGTGTGACGT AGTTATGTTG CGTTCCGGAA TCGGAAGAGC GGCATTAATT
  GGCGCCTTTC GGCAGCCGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8801632	WI_WGS_11_107004136	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6395451					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106107514 () rs orientation: forward

Symbol	Name	Function Class
Ccdc47	coiled-coil domain containing 47	165 bp upstream
Cpgi4018	CpG island 4018	within coordinates
Ddx42	DEAD box helicase 42	238 bp upstream
Gm74325	predicted gene, 74325	89 bp downstream
Rr369397	regulatory region 369397	within coordinates
Rr403037	regulatory region 403037	122 bp downstream
Tssr105500	transcription start site region 105500	211 bp downstream
Tssr105501	transcription start site region 105501	156 bp downstream
Tssr105502	transcription start site region 105502	240 bp upstream
Tssr105503	transcription start site region 105503	283 bp upstream
Tssr105504	transcription start site region 105504	308 bp upstream
Tssr105505	transcription start site region 105505	363 bp upstream
Tssr111304	transcription start site region 111304	371 bp upstream
Tssr111305	transcription start site region 111305	325 bp upstream