rs6395577 SNP Detail

Summary

• ID
  rs6395577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163437314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTACACT GTCCCTGAGG
  GTGGGCTGAC CTTGACAGAT GCAGGCACTT TCCAATGTCA GGCAGCAGCC CATTCCTCTC
  AGCCCTAGCT GTCCCAGCAT TGAACTCCCA TACTTAAGCT TTCCAAACAG CTCCTCTCTG
  CTTCTGTCCT CCCCAGGAGA TGGCTGCTCT CCCCTCCCTT CCCTCCTCTC ACCCCAGGAA
  R
  CCCTTGGGTA AACACAGGAA TCGTAGGAAG GGGAGGGGCT TCTGTTGCTC ATAACCAGAT
  CTCAGCAGTG GAGAGTTTGG CCCTGTACCC TTGAAAAAAA ACCTGCTGGC TACCCCAGGG
  GAGCTTTCTC CAACTTTGTA CAAGTCACTT CCATCTTCCG GAACCTCACT TTTCACGTTT
  CTTCAGGAAC TAGTCATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8801759	WI_WGS_2_164527289	WI	MOUSE	f	SNP			G	A
ss45288374	mCV23585542	ABI	CRAMUS_MOUSE	f	SNP	A	G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6395577					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163437314 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	924 bp downstream
Rr569427	regulatory region 569427	1038 bp distal
Rr569428	regulatory region 569428	within coordinates