rs6395642 SNP Detail

Summary

• ID
  rs6395642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174501062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACGACTGA CTGCGTTCTG
  TCTTTGAATA GTCCATAGTT CCCTGTTTCT TGAACATTCG TTTGATTATT ATTTTTATTT
  AGAATTGGAT AATGCAGCAA TGCAGATCAC TCCTGGAGTC CACTGGTTTG TTTGAAGATA
  AAAATAAGAC ATGGCAGCCA AGGAGTTGGC TGAGTGGATA GACATATCTA TTGTGTAAAT
  R
  TGAGGACCAG AGTTCTCTAA AACCTGTGTA AATGCAGGGT GTGCACAGCA ACCACGTGTA
  ATTTCAGTGC CCAGAGGCAG AGAAATAGAT TGCTAGAGCT AAGAGCAAGC TGGCTAGTTA
  GAGTAGCCAG TTAGTCATCC CAGAGACCTG TAGGTTCAAT TGAGAGAACC TGCCTCAAAG
  AATAGAGTGG AGACTGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8801825	WI_WGS_1_175986130	WI	MOUSE	f	SNP		G	A
ss146292452	ENSMUSSNP3090629	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			A
ss320143627	CHEV_1_176603627	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6395642					SNP	G	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174501062 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423785	regulatory region 423785	1255 bp proximal
Rr423786	regulatory region 423786	1328 bp proximal