rs6396073 SNP Detail

Summary

• ID
  rs6396073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163437404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCAGGCACTT
  TCCAATGTCA GGCAGCAGCC CATTCCTCTC AGCCCTAGCT GTCCCAGCAT TGAACTCCCA
  TACTTAAGCT TTCCAAACAG CTCCTCTCTG CTTCTGTCCT CCCCAGGAGA TGGCTGCTCT
  CCCCTCCCTT CCCTCCTCTC ACCCCAGGAA NCCCTTGGGT AAACACAGGA ATCGTAGGAA
  GGGGAGGGGC TTCTGTTGCT CATAACCAGA TCTCAGCAGT GGAGAGTTTG GCCCTGTACC
  Y
  TTGAAAAAAA ACCTGCTGGC TACCCCAGGG GAGCTTTCTC CAACTTTGTA CAAGTCACTT
  CCATCTTCCG GAACCTCACT TTTCACGTTT CTTCAGGAAC TAGTCATCTG TATTCATTGG
  GCTGGTTGTG ATGGTGTGTT CGACCTGGTG AATTTACAGA GCATCCTCAG ATCTGACACG
  AGAGACCTCT CAGCACAGCC CTGCAATTCC TTCTCTGTGA GACCATTTAT AAGCCGCCTG
  ATCTCTCTGA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8802258	WI_WGS_2_164527379	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6396073					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163437404 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	1014 bp downstream
Rr569427	regulatory region 569427	1128 bp distal
Rr569428	regulatory region 569428	within coordinates