rs6396451 SNP Detail

Summary

• ID
  rs6396451
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106107688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGGACA TTCTTATGTA
  AATGAAGTTT CCAATCAACA CCTTATTACC TTGAGTTTTT CGGGCGGTTC CCCATCGCCG
  CGGCTCTCTT CATTGCAGAC TCCCTCACTA CACGACCCAG ACACAATCCT CACCCAGGAC
  CAGATTCCCG TCCGGGGTGT GTGACGTAGT TATGTTGCGT TCCGGAATCG GAAGAGCGGC
  W
  TTAATTGGCG CCTTTCGGCA GCCGTAGCCC CAGCCCCACC CTTCGGCTCG CGCTCTACTT
  AGCGCGCATG TCAGACGCTC CCCCCACCCT ACCCCCAGTC AGCAACGGGC CGTGAGGCGG
  CGGCGAAGGG GGCGGAGGAA GAGCGCGGCT GGACGCGGTC CCGCACCGCG CGTACGCAGG
  GCCGCGGGGG TTCTTTCGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8802636	WI_WGS_11_107004310	WI	MOUSE	f	SNP							A		T
ss37271530	NES08547156	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6396451					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271530	NES08547156	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106107688 () rs orientation: forward

Symbol	Name	Function Class
Ccdc47	coiled-coil domain containing 47	339 bp upstream
Cpgi4018	CpG island 4018	within coordinates
Ddx42	DEAD box helicase 42	64 bp upstream
Gm74325	predicted gene, 74325	263 bp downstream
Rr245973	regulatory region 245973	within coordinates
Rr369397	regulatory region 369397	within coordinates
Rr403037	regulatory region 403037	296 bp downstream
Tssr105500	transcription start site region 105500	385 bp downstream
Tssr105501	transcription start site region 105501	330 bp downstream
Tssr105502	transcription start site region 105502	66 bp upstream
Tssr105503	transcription start site region 105503	109 bp upstream
Tssr105504	transcription start site region 105504	134 bp upstream
Tssr105505	transcription start site region 105505	189 bp upstream
Tssr111304	transcription start site region 111304	545 bp upstream
Tssr111305	transcription start site region 111305	499 bp upstream