rs6396722 SNP Detail

Summary

• ID
  rs6396722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134946051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCG CCGTGAGAGA GGAAGCCCAG
  Y
  CTGGGCAGGC CGTGCCCCAG TAACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss8802907	WI_WGS_4_132802520	WI	MOUSE	f	SNP				T	C
ss37780912	NES09153699	PERLEGEN	MM_PANEL2	f	SNP		C	C			T	C	C		C	T	C		C
ss147541539	ENSMUSSNP5852583	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					T
ss321351226	CHEV_4_134774655	CHEVERUD	SCREENING_POP	f	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs6396722					SNP	C	C	C	T	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780912	NES09153699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134946051 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	851 bp distal
Rr86244	regulatory region 86244	750 bp proximal
Rr102925	regulatory region 102925	1351 bp proximal
Tssr43958	transcription start site region 43958	1927 bp upstream
Tssr43959	transcription start site region 43959	1906 bp upstream
Tssr43960	transcription start site region 43960	1754 bp upstream
Tssr43961	transcription start site region 43961	1695 bp upstream
Tssr43962	transcription start site region 43962	1649 bp upstream
Tssr43963	transcription start site region 43963	1590 bp upstream
Tssr43964	transcription start site region 43964	1478 bp upstream
Tssr43965	transcription start site region 43965	86 bp upstream