rs6396760 SNP Detail

Summary

• ID
  rs6396760
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:149509358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCATA AAAAGACAGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTAAGAGA GAGAGAGACA GACAGACAGA
  CAGAAATGAA GACAGAGAGA CAGAGACACA GAGACAGAGA GACAGAGAAT ATACACACGT
  GTGTGCAGAG GCCTGAAGAG GGCAATCATT TGGAGCTGGA GTTACATGTG ATTGTATGCC
  W
  TCAAATATGT GGGTTTGGGG AGCTGAGCTC AGGTCTTTTT GTGAGTGCTG CTAACCACTG
  AACCATCTCT CCAGCCCACT TATCCACAGT TTTCAATTAG GAATTTGTTA TCTACTGATG
  GATTTACAAG TTCTTTCTGT ATTTGAATAC ACACTCTTTA TGAAATTTAT GCCTTGTATA
  TATTTTCTCC TGGTTTGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8802945	WI_WGS_2_150701170	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6396760					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:149509358 () rs orientation: forward

Symbol	Name	Function Class
Gm53264	predicted gene, 53264	within coordinates
Rr566994	regulatory region 566994	700 bp distal