rs6397000 SNP Detail

Summary

• ID
  rs6397000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143655439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTCACA TGTACAGAAA
  ACTTGGAATT TGAAAATAAT TTAAAGTTAG ACATTTTAGT AATATAAGTG CATCTGCACA
  TACTGAGTAA AGCAGTCGTC AGTAACGGAT TGTTAGTAAT GGATTGTTGG CTCCTAGTGT
  AGAAGGATTT TGCACATTAA ATGAAGGTAA TTTATAACAT TAGCTGCTTC AAAGGAAAAA
  R
  TGCTTTATTC TAATTATTTT CATTTTTTCC TTGTCCAGTT CTTATATTTA CAATAGGGTT
  TGGAAGTTTA CTTGTCTGAA AGTGAAACAT CTGTTTGTAT TATGAATACT ATTGCAATGT
  TTTTGAAATG AACTCACTGT CTAACGTAGC CTTCACTGTG TTGACACAGG TGTAGCAAGA
  TACAGATATC TTTGACAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8803186	WI_WGS_1_144639661	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6397000					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143655439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi837	CpG island 837	1641 bp distal
Gm25663	predicted gene, 25663	639 bp downstream
Gm29170	predicted gene 29170	within coordinates
Rr396353	regulatory region 396353	1333 bp downstream
Rr419946	regulatory region 419946	1340 bp distal
Uchl5	ubiquitin carboxyl-terminal esterase L5	within coordinates