rs6397264 SNP Detail

Summary

• ID
  rs6397264
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181162666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGAAGTGG GGCGAGGGCG CCGCAGCAGG AGGTGAAAGC
  TGCCCGCAGC GGAAATGGCG GCGACCCTCA GCAGCGGCGG CGAGCCCGGC CCTGGGCACC
  R
  CTAGGCCCTG CTCGACCTTG CGCACGGCGG GGCGGCGCGG AGACGAGGCT TTCCGGGCCA
  ACTCCGGTTC GCACGCGCGG CCGCCTCCGC GGCTCCCGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8803451	WI_WGS_2_179852340	WI	MOUSE	f	SNP			A	G
ss45366737	mCV23779792	ABI	CRAMUS_MOUSE	f	SNP	A	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6397264					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181162666 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12929	CpG island 12929			within coordinates
Dnajc5	DnaJ heat shock protein family (Hsp40) member C5			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm74773	predicted gene, 74773			444 bp upstream
Rr573023	regulatory region 573023			455 bp distal
Rr573024	regulatory region 573024			501 bp distal
Rr573025	regulatory region 573025			within coordinates
Rr573026	regulatory region 573026			85 bp proximal
Rr573027	regulatory region 573027			1763 bp proximal
Tssr22317	transcription start site region 22317			342 bp downstream
Tssr22318	transcription start site region 22318			310 bp downstream
Tssr22319	transcription start site region 22319			280 bp downstream