rs6397477 SNP Detail

Summary

• ID
  rs6397477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143655510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA CAATAGGGTT TGGAAGTTTA
  Y
  TTGTCTGAAA GTGAAACATC TGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8803664	WI_WGS_1_144639732	WI	MOUSE	f	SNP			C	T
ss45052159	mCV24687434	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145631911	ENSMUSSNP3209289	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320010613	CHEV_1_145626902	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6397477					SNP	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143655510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi837	CpG island 837	1712 bp distal
Gm25663	predicted gene, 25663	710 bp downstream
Gm29170	predicted gene 29170	within coordinates
Rr396353	regulatory region 396353	1404 bp downstream
Rr419946	regulatory region 419946	1411 bp distal
Uchl5	ubiquitin carboxyl-terminal esterase L5	within coordinates