rs6397742 SNP Detail

Summary

• ID
  rs6397742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:71303872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT CAGTTATCTG TTTGTTTGCA
  Y
  TTTCATGTGT AGGTAAGAAG GACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8803929	WI_WGS_2_72266184	WI	MOUSE	f	SNP			C	T
ss146745138	ENSMUSSNP3502587	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			C
ss320338037	CHEV_2_71311585	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6397742					SNP	C	T	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71303872 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Metap1d	methionyl aminopeptidase type 1D (mitochondrial)			Intron
				Noncoding-Transcript-Variant
Rr558755	regulatory region 558755			863 bp proximal