rs6397820 SNP Detail

Summary

• ID
  rs6397820
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117040717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACAGGGA AACCCTTTCT
  AGAAAAACAA AACAAAACAG AACACAAGAG AAGCGGGGTA TGGTAGATCA TGCCTATAAT
  CCTAGCTCCC TGTAGATGAA GAAAAGAGAA TAATTTCAAA GCCAACCTTA GCTAAGCAGC
  ATGTTTGAGG CCAGAGTGGG CTGTGTGAAA CTGTCTCAAA CAAACAAACA AACAAACAAA
  M
  AAAGATGCTG GCAATGAAAA GCAGCCTACA ATGCCTAAAT GCTGGAATTA GCATGAATCA
  CCATACCTGA TTTTTGTCAT TATTTATAAT GTCTTTTTGT TTCGTAGTAC TAGGTATTAA
  CTCCAGGACT TTGTGCATGT GCCACTACTG TCCGGCTTCT AGGGGAACGT TCTTACACTG
  AACCACATCA TTACTGCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804007	WI_WGS_4_114945782	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6397820					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117040717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14654	CpG island 14654	593 bp distal
Kif2c	kinesin family member 2C	896 bp upstream
Rr398412	regulatory region 398412	713 bp downstream
Rr598074	regulatory region 598074	892 bp distal
Rr598075	regulatory region 598075	391 bp distal
Tssr42965	transcription start site region 42965	917 bp upstream
Tssr42966	transcription start site region 42966	884 bp upstream
Tssr42967	transcription start site region 42967	569 bp upstream