rs6397825 SNP Detail

Summary

• ID
  rs6397825
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78240257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTCTCT CAGTGGTGGC
  ATTACCACAA GCAGAGCTCA ACAATGCTAT GTAAGGCGAA CCAATACATG TCCTTAGTGA
  AGAATAGCGA GGTGGAGCAA AGCAAACCAA TGCTCCAGCT CTCACTGTCT GTGGAGTTAT
  ATTTATATTC CTTCATCATG TCATTTCTCA ATGTCTGCTT TAGCAAGACA TCCTTTCACC
  W
  GTGTGCCCCA GCAAAACATC ATTTGGCACA ACTGACTTCC CAAAGAAATT TTAAGTTTCC
  ACTTCACAAC CCCTTCTCAT TTTTTATCTT GAATATCCTG AAGACCTAGG CAGATCTTTT
  GATGAATACT CACCAACATT CTCAAAACCT TCTTCCTTGA ATTTCTGCTT ATTGGTTCTA
  CCAAGTTCCA GCCCAGAATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804012	WI_WGS_12_72871012	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6397825					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78240257 () rs orientation: forward

Symbol	Name	Function Class
Ccdc196	coiled-coil domain containing 196	759 bp upstream
Gm59517	predicted gene, 59517	within coordinates
Tssr114034	transcription start site region 114034	742 bp upstream