rs6397883 SNP Detail

Summary

• ID
  rs6397883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134946322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC CAAGACAGAA AGCATAATCC
  Y
  GCTCACGAAG AAATGTGTCA AGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8804070	WI_WGS_4_132802791	WI	MOUSE	f	SNP								T		C
ss37780909	NES09153702	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	T	C		C		T	C	C		C	T	C	C		C
ss45612802	mCV25114928	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T
ss147541553	ENSMUSSNP2941293	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C								T
ss321351229	CHEV_4_134774926	CHEVERUD	SCREENING_POP	f	SNP														C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6397883					SNP	C	C	C	C	T	T	C	T	C	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780909	NES09153702	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134946322 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	1122 bp distal
Rr86244	regulatory region 86244	479 bp proximal
Rr102925	regulatory region 102925	1080 bp proximal
Tssr43961	transcription start site region 43961	1966 bp upstream
Tssr43962	transcription start site region 43962	1920 bp upstream
Tssr43963	transcription start site region 43963	1861 bp upstream
Tssr43964	transcription start site region 43964	1749 bp upstream
Tssr43965	transcription start site region 43965	357 bp upstream