rs6397992 SNP Detail

Summary

• ID
  rs6397992
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:143655583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTTGCA CATTAAATGA
  AGGTAATTTA TAACATTAGC TGCTTCAAAG GAAAAAATGC TTTATTCTAA TTATTTTCAT
  TTTTTCCTTG TCCAGTTCTT ATATTTACAA TAGGGTTTGG AAGTTTACTT GTCTGAAAGT
  GAAACATCTG TTTGTATTAT GAATACTATT GCAATGTTTT TGAAATGAAC TCACTGTCTA
  W
  CGTAGCCTTC ACTGTGTTGA CACAGGTGTA GCAAGATACA GATATCTTTG ACAGGAGAGA
  AGTCTGGAGT ATTTCTTCAT CTGTAATTAC TGCCTCATGC TTAAATACGG ATGGGAATTA
  ATTGGGTCCT TGAAATTAAG TCACTTATGA TCACATCTAA GGTGTATTTT ACTTTGTTCT
  GAGGAAAGAA AGAAGATAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8804179	WI_WGS_1_144639805	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6397992					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143655583 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi837	CpG island 837			1785 bp distal
Gm25663	predicted gene, 25663			783 bp downstream
Gm29170	predicted gene 29170			within coordinates
Rr396353	regulatory region 396353			1477 bp downstream
Rr419946	regulatory region 419946			1484 bp distal
Uchl5	ubiquitin carboxyl-terminal esterase L5			Intron
				Noncoding-Transcript-Variant