rs6398169 SNP Detail

Summary

• ID
  rs6398169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65201664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC GCTGCGCCAG CATAGAACCG
  R
  CGGAAGGGAG CGGAGCCAGT CAGCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8804357	WI_WGS_9_65876854	WI	MOUSE	f	SNP						A	G
ss46350410	mCV23534751	ABI	CRAMUS_MOUSE	f	SNP	G	G				A
ss47726004	NES11329051	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G			G	G	G		G	G	G	A		G
ss136566865	ENSMUSSNP1952449	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss322986419	CHEV_9_65142189	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6398169					SNP	G	G	A	G	G	A	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47726004	NES11329051	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65201664 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	within coordinates
Cpgi21943	CpG island 21943	within coordinates
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	102 bp downstream
Tssr85679	transcription start site region 85679	213 bp downstream
Tssr85680	transcription start site region 85680	178 bp downstream
Tssr85681	transcription start site region 85681	41 bp downstream
Tssr85682	transcription start site region 85682	7 bp downstream
Tssr85683	transcription start site region 85683	13 bp upstream
Tssr85684	transcription start site region 85684	45 bp upstream
Tssr85685	transcription start site region 85685	58 bp upstream
Tssr85686	transcription start site region 85686	175 bp upstream